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GitHub Desktop vs Microsoft OneNote

GitHub Desktop logo

GitHub Desktop

Technology

A free, open source Git client from GitHub for Windows and macOS that covers common workflows rather than all of Git.

From
Free
Rated
-
Full reviewWebsite
Microsoft OneNote logo

Microsoft OneNote

Productivity

Microsoft's free-form notebook, free with a Microsoft account and synced through OneDrive

From
Free
Rated
-
Full reviewWebsite

The short version

  • Each has a real cost: GitHub Desktop there is no official Linux build; the application ships for Windows and macOS only, and the community fork at shiftkey/desktop that packages it for Linux is maintained separately and lags official releases, so a mixed-OS team cannot standardise on one client.; Microsoft OneNote notes live in a proprietary notebook format on OneDrive or SharePoint and the only exports are a OneNote file, a PDF or a Word document, produced section by section, so a large notebook is effectively unmovable to any other tool.
  • They diverge on capability: GitHub Desktop covers Line-level staging, Microsoft OneNote covers Free-form page canvas.
  • Prices and features above were last checked on 30 August 2026.

Where they differ

Only the attributes on which GitHub Desktop and Microsoft OneNote actually diverge.

Attributes where GitHub Desktop and Microsoft OneNote differ
AttributeGitHub DesktopMicrosoft OneNote
Pricing modelfreefreemium
PlatformsWindows, MacosWeb, IOS, Android, MacOS, Windows
CategoryTechnologyProductivity
Founded20081975

Identical on both: starting price (Free), free tier (Yes), user rating (Not yet rated).

What each one covers

Drawn from each product's published feature list. An absence here means we hold no record of it - not that the product lacks it.

Only in GitHub Desktop

  • Line-level staging
  • Branch and merge UI
  • Pull request integration
  • Enterprise authentication
  • Squash and reorder
  • Drag cherry-pick
  • Co-author attribution
  • Editor and shell handoff

Only in Microsoft OneNote

  • Free-form page canvas
  • Notebook hierarchy
  • Indexed handwriting
  • Audio recording
  • Web clipper and Outlook capture
  • Shared notebooks
  • Cross-platform clients
  • Tags and cross-notebook search

What people use each for

The jobs each tool is most often brought in to do.

GitHub Desktop

  • Onboarding designers or technical writers who need to commit to a docs or assets repository without learning the command linenot Microsoft OneNote
  • A new engineer's first weeks, where seeing the diff and the branch state visually prevents the common early mistakesnot Microsoft OneNote
  • Reviewing a colleague's pull request branch locally with a readable diff before approving itnot Microsoft OneNote
  • Small teams standardised entirely on GitHub who want SSO-backed authentication to work without managing personal access tokens by handnot Microsoft OneNote

Microsoft OneNote

  • Handwritten notes on a pen tablet that you still need to find months later by searching for a word you wrote.not GitHub Desktop
  • Lecture or meeting notes where a recording needs to line up with what you were typing at the time.not GitHub Desktop
  • A team already inside Microsoft 365 that needs a shared notebook without buying anything or seeking approval.not GitHub Desktop
  • Collecting mixed material such as screenshots, clippings and sketches on one page, where a document editor would force a linear structure.not GitHub Desktop

Where each one falls short

Documented limitations, not opinions. Every one is a constraint you would hit in normal use.

GitHub Desktop

  • There is no official Linux build; the application ships for Windows and macOS only, and the community fork at shiftkey/desktop that packages it for Linux is maintained separately and lags official releases, so a mixed-OS team cannot standardise on one client.
  • Submodules are effectively unsupported: the app shows a submodule change as an opaque single line and gives you no way to initialise, update or navigate into it, so any repository using them needs the terminal anyway.
  • History rewriting is limited to squashing and reordering local commits by drag and drop; interactive rebase, fixup chains, editing an old commit's contents and bisect are all absent, which is exactly the set of operations a beginner needs help with most.
  • Pull request features only exist for GitHub remotes, so a team on GitLab or Bitbucket gets a plain Git client with an empty pull request pane and no review or checks view at all.
  • Commit signing with a key that requires a passphrase generally fails, because the app cannot surface the pinentry prompt, and the resulting error message does not say that is the cause.
  • GitHub staffs it lightly compared with its web and CI products, so long-standing feature requests and bugs sit open for years; if you file an issue you should plan around it rather than expect a fix.

Microsoft OneNote

  • Notes live in a proprietary notebook format on OneDrive or SharePoint and the only exports are a OneNote file, a PDF or a Word document, produced section by section, so a large notebook is effectively unmovable to any other tool.
  • Personal notebooks consume OneDrive quota, which is 5 GB on a free Microsoft account, so a notebook full of scans, images and recordings quietly exhausts the whole account including the space Outlook needs for mail.
  • Sync happens at section level and conflicts are resolved by placing both versions on the page, so simultaneous edits to a large or media-heavy section produce duplicated content that somebody has to merge by hand.
  • Search behaves differently across clients, so what the Windows desktop app finds inside handwriting, images and attachments is not necessarily what the browser or mobile version finds, and the same query gives different answers on different devices.
  • There is no relational structure, no database and no properties, so anything that needs a table of records with fields has to be maintained by hand or moved elsewhere, and OneNote's own tables cannot be queried or filtered.

Pricing, plan by plan

GitHub Desktop

Free
  • FreeFree
    • Git repository management
    • GitHub integration
    • Visual diff tools

Microsoft OneNote

Free

No published plan breakdown. See the Microsoft OneNote review.

Which should you pick?

Choose GitHub Desktop if

  • You need line-level staging.
  • You want to start without paying.
  • You work on Windows, Macos.
  • You also want branch and merge ui.
GitHub Desktop review

Choose Microsoft OneNote if

  • You need free-form page canvas.
  • You want to start without paying.
  • You work on Web, IOS, Android, MacOS, Windows.
  • You also want notebook hierarchy.
Microsoft OneNote review

Questions people ask

Is GitHub Desktop or Microsoft OneNote better?
Neither clearly leads. GitHub Desktop starts at Free and Microsoft OneNote at Free, and user ratings are close enough to be indistinguishable. Choose on capability and platform support.
Which is cheaper, GitHub Desktop or Microsoft OneNote?
GitHub Desktop starts at Free and Microsoft OneNote at Free.
Does GitHub Desktop or Microsoft OneNote run on more platforms?
GitHub Desktop runs on Windows, Macos. Microsoft OneNote runs on Web, IOS, Android, MacOS, Windows.
Can I use GitHub Desktop for free?
Both have a free tier, so you can try either at no cost before committing.
What is GitHub Desktop best used for?
GitHub Desktop is most often used for onboarding designers or technical writers who need to commit to a docs or assets repository without learning the command line, a new engineer's first weeks, where seeing the diff and the branch state visually prevents the common early mistakes, reviewing a colleague's pull request branch locally with a readable diff before approving it, small teams standardised entirely on github who want sso-backed authentication to work without managing personal access tokens by hand. Of those, onboarding designers or technical writers who need to commit to a docs or assets repository without learning the command line and a new engineer's first weeks, where seeing the diff and the branch state visually prevents the common early mistakes are not what Microsoft OneNote is typically brought in for.
What can GitHub Desktop do that Microsoft OneNote cannot?
GitHub Desktop covers Line-level staging, Branch and merge UI, Pull request integration, Enterprise authentication. Microsoft OneNote covers Free-form page canvas, Notebook hierarchy, Indexed handwriting, Audio recording.

Answered from the vendors’ own pages

GitHub Desktop: Is there a Linux version?

Not an official one. GitHub ships Windows and macOS builds only. A community fork, shiftkey/desktop, produces Linux packages, but it is maintained by volunteers and trails the official releases.

Microsoft OneNote: Is OneNote really free?

Yes. The application is free with a Microsoft account, with no time limit and no feature gate. What you may end up paying for is the OneDrive storage the notebooks consume.

GitHub Desktop: Does it work with GitLab or Bitbucket?

For plain Git operations, yes: you can clone, commit, push and pull against any remote. The pull request, review and checks features only work against GitHub.com and GitHub Enterprise.

Microsoft OneNote: Can I keep notebooks off Microsoft's cloud?

The Windows desktop app can keep local notebooks, but they will not sync to other devices and any shared access requires OneDrive or SharePoint.

GitHub Desktop: What does it cost?

Nothing. It is free and the source is published under the MIT licence, and it is separate from any GitHub plan you may or may not pay for.

Microsoft OneNote: How do I get my notes out?

Section by section as a OneNote file, a PDF or a Word document. A OneNote package preserves a whole notebook but only for another copy of OneNote. Third-party converters exist and the page layout usually does not survive them.

GitHub Desktop: Will it handle submodules?

No. Submodule changes appear as an unreadable single-line diff and there are no controls for initialising or updating them. Repositories that use submodules need the command line.

Microsoft OneNote: Which version should I install?

Microsoft consolidated onto a single OneNote application on Windows after retiring the Store version, so install the one distributed with Microsoft 365 rather than looking for an alternative.

GitHub Desktop: Do I still need to learn Git?

For everyday work, no. For recovery, yes. Anything beyond the curated set of operations, including interactive rebase and reflog recovery, happens in the terminal, so a team using it should have at least one person who knows Git properly.

GitHub Desktop: Does it work with GitHub Enterprise Server?

Yes. It signs in to GitHub Enterprise Server and GitHub Enterprise Cloud as well as GitHub.com, and it honours organisations that enforce SAML single sign-on.

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